Knowledge Discovery: Resources

Auxiliary files

Brief descriptionFileFormat
Manually created list of semantic types deemed unhelpful for LBD.filtered semtypes (1.3 Kb)one semantic type per line
UMLS 2011AB terms used in experiments along with indexes.2011AB terms (gz, 13Mb)index CUI
UMLS 2013AB terms used in experiments along with indexes.2013AB terms (gz, 14Mb)index CUI
UMLS 2014AB terms used in experiments along with indexes.2014AB terms (gz, 15Mb)index CUI
UMLS 2015AA terms used in experiments along with indexes used throughout.2015AA terms (gz, 15Mb)index CUI
UMLS 2011AB synonym list (at least 2 sources, class size at most 5).2011AB synonyms (66 Kb)CUI_class_name: CUIs_separated_by_spaces
UMLS 2013AB synonym list (at least 2 sources, class size at most 5).2013AB synonyms (6 Kb)CUI_class_name: CUIs_separated_by_spaces
UMLS 2014AB synonym list (at least 2 sources, class size at most 5).2014AB synonyms (6 Kb)CUI_class_name: CUIs_separated_by_spaces
UMLS 2015AA synonym list (at least 2 sources, class size at most 5).2015AA synonyms (6 Kb)CUI_class_name: CUIs_separated_by_spaces
UMLS 2015AA relation pairs extracted from SemRep, synonym merging applied.semrep_pairs (gz, 23Mb)index_cui1 index_cui2 freq
UMLS 2015AA SemRep based common linking terms (generated from sy-st).Coming soon!CUI

Hidden knowledge

Hidden data produced in our LBD filtering & WSD work (where the hidden data exceeds reasonable size, auxiliary files are provided above and the size of the compressed file generated is stated below). We also link to the publication(s) which use the result.

IdBrief descriptionFileFormatPublications
2013AB.cti.mm2013AB, title co-occurrence, MetaMap WSD.index1 index2 weightBMC 2016
2013AB.cti.kta2013AB, title co-ocurrence, KTA WSD.index1 index2 weightBMC 2016
2013AB.cti.ppr2013AB, title co-ocurrence, PPR WSD.index1 index2 weightBMC 2016
2013AB.none2013AB, SemRep relations, no filtering.index1 index2 weightBioNLP 2014
2013AB.semrep.sy2013AB, SemRep relations, synonym merging only.index1 index2 weightBioNLP 2014
2013AB.semrep.sy-clt2002013AB, SemRep relations, synonym merging and common linking terms (threshold 200).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-hf29002013AB, SemRep relations, synonym merging and breaking linking terms (threshold 2900).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-hfmin9002013AB, SemRep relations, synonym merging and min breaking linking terms (threshold 900).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-hfmin4002013AB, SemRep relations, synonym merging and min breaking linking terms (threshold 400).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-st2013AB, SemRep relations, synonym merging and manual semantic types filtering.index1 index2 weightBioNLP 2014
2013AB.semrep.sy-st-clt2002013AB, SemRep relations, synonym merging, semantic types filtering and common linking terms (threshold 200).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-st-hf29002013AB, SemRep relations, synonym merging, semantic type filtering and breaking linking terms (threshold 2900).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-st-hfmin9002013AB, SemRep relations, synonym merging, semantic type filtering and min breaking linking terms (threshold 900).index1 index2 weightBioNLP 2014
2013AB.semrep.sy-st-hfmin4002013AB, SemRep relations, synonym merging, semantic type filtering and min breaking linking terms (threshold 400).index1 index2 weightBioNLP 2014
2011AB.c-doc.sy-st2011AB, document co-occurrence relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015
2011AB.c-sent.sy-st2011AB, sentence co-occurrence relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015
2011AB.c-title.sy-st2011AB, title co-occurrence relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015
2011AB.semrep.sy-st2011AB, SemRep relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015
2011AB.reverb.sy-st2011AB, ReVerb relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015
2011AB.stanford.sy-st2011AB, Stanford relations, synonym merging and manual semantic types filtering.index1 index2 weightJAMIA 2015